Swan
Last updated
Was this helpful?
Last updated
Was this helpful?
Swan is a Python library designed for the analysis and visualization of transcriptomes, especially with long-read transcriptomes in mind. Users can add transcriptomes from different datasets and explore distinct splicing and expression patterns across datasets.
Please visit the to download and view the source code
Also see the for the exact commands used to do the analysis in our .
Swan can make informative plots, find differentially expressed genes and transcripts, find isoform-switching genes, and discover novel exon skipping and intron retention events.
Swan can be installed directly from PyPi. To install Swan's most recent release, run
pip install swan_vis
pip install .
Also see our for in-depth tutorials and documentation
Alternatively, the most recent commits can be installed by git cloning , moving to the swan_vis directory, and running
: how to load data into Swan
: make gene and transcript-level plots to visualize the complexity of alternative splicing
: find differentially expressed genes and transcripts; find isoform-switching genes, discover novel intron retention and exon skipping events
: Some brief examples of how to use external Scanpy plotting functions on Swan objects
For full documentaion, please visit
Logo by the wonderful